Last updated: 2006-08-29

2006

Development of an automated large-scale protein-crystallization and monitoring system for high-throughput protein-structure analyses.
Hiraki M, Kato R, Nagai M, Satoh T, Hirano S, Ihara K, Kudo N, Nagae M, Kobayashi M, Inoue M, Uejima T, Oda S, Chavas LM, Akutsu M, Yamada Y, Kawasaki M, Matsugaki N, Igarashi N, Suzuki M, Wakatsuki S.
Acta Crystallogr D Biol Crystallogr. 2006 Sep;62(Pt 9):1058-65.

Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope.
Shiba T, Kakuda S, Ishiguro M, Morita I, Oka S, Kawasaki T, Wakatsuki S, Kato R.
Proteins. 2006 Aug 8.

Structural Basis of Carbohydrate Transfer Activity by Human UDP-GalNAc: Polypeptide alpha-N-Acetylgalactosaminyltransferase (pp-GalNAc-T10).
Kubota T, Shiba T, Sugioka S, Furukawa S, Sawaki H, Kato R, Wakatsuki S, Narimatsu H.
J Mol Biol. 2006 Apr 19;

Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting.
Hirano S, Kawasaki M, Ura H, Kato R, Raiborg C, Stenmark H, Wakatsuki S.
Nat Struct Mol Biol. 2006 Mar;13(3):272-7.

Structures of carbohydrate recognition domain of Ca2+ -independent cargo receptors Emp46p and Emp47p.
Satoh T, Sato K, Kanoh A, Yamashita K, Yamada Y, Igarashi N, Kato R, Nakano A, Wakatsuki S.
J Biol Chem. 2006 Jan 26

2005

Membrane recruitment of effector proteins by Arf and Rab GTPases.
Kawasaki M, Nakayama K, Wakatsuki S.
Curr Opin Struct Biol. 2005 Dec;15(6):681-9. Review.

Structural basis for transcription inhibition by tagetitoxin.
Vassylyev DG, Svetlov V, Vassylyeva MN, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Artsimovitch I.
Nat Struct Mol Biol. 2005 Dec;12(12):1086-93.

Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain.
Akutsu M, Kawasaki M, Katoh Y, Shiba T, Yamaguchi Y, Kato R, Kato K, Nakayama K, Wakatsuki S.
FEBS Lett. 2005 Oct 10;579(24):5385-91.

Structural basis of transcription inhibition by antibiotic streptolydigin.
Temiakov D, Zenkin N, Vassylyeva MN, Perederina A, Tahirov TH, Kashkina E, Savkina M, Zorov S, Nikiforov V, Igarashi N, Matsugaki N, Wakatsuki S, Severinov K, Vassylyev DG.
Mol Cell. 2005 Sep 2;19(5):655-66.

Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Artsimovitch I, Vassylyeva MN, Svetlov D, Svetlov V, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Tahirov TH, Vassylyev DG.
Cell. 2005 Aug 12;122(3):351-63.

Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition.
Chang CI, Ihara K, Chelliah Y, Mengin-Lecreulx D, Wakatsuki S, Deisenhofer J.
Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10279-84.

Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Kawasaki M, Shiba T, Shiba Y, Yamaguchi Y, Matsugaki N, Igarashi N, Suzuki M, Kato R, Kato K, Nakayama K, Wakatsuki S.
Genes Cells. 2005 Jul;10(7):639-54.

Structure determination of GGA-GAE and gamma1-ear in complex with peptides: crystallization of low-affinity complexes in membrane traffic.
Yamada Y, Inoue M, Shiba T, Kawasaki M, Kato R, Nakayama K, Wakatsuki S.
Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):731-6.

Eap45 in mammalian ESCRT-II binds ubiquitin via a phosphoinositide-interacting GLUE domain.
Slagsvold T, Aasland R, Hirano S, Bache KG, Raiborg C, Trambaiolo D, Wakatsuki S, Stenmark H.
J Biol Chem. 2005 May 20;280(20):19600-6.

Crystal structure of the human cytosolic sialidase Neu2. Evidence for the dynamic nature of substrate recognition.
Chavas LM, Tringali C, Fusi P, Venerando B, Tettamanti G, Kato R, Monti E, Wakatsuki S. J Biol Chem. 2005 Jan 7;280(1):469-75. Epub 2004 Oct 22.

2004

Insights into the phosphoregulation of beta-secretase sorting signal by the VHS domain of GGA1.
Shiba T, Kametaka S, Kawasaki M, Shibata M, Waguri S, Uchiyama Y, Wakatsuki S.
Traffic. 2004 Jun;5(6):437-48.

Structural basis for acceptor substrate recognition of a human glucuronyltransferase, GlcAT-P, an enzyme critical in the biosynthesis of the carbohydrate epitope HNK-1.
Kakuda S, Shiba T, Ishiguro M, Tagawa H, Oka S, Kajihara Y, Kawasaki T, Wakatsuki S, Kato R.
J Biol Chem. 2004 May 21;279(21):22693-703.

GAT (GGA and Tom1) domain responsible for ubiquitin binding and ubiquitination.
Shiba Y, Katoh Y, Shiba T, Yoshino K, Takatsu H, Kobayashi H, Shin HW, Wakatsuki S, Nakayama K.
J Biol Chem. 2004 Feb 20;279(8):7105-11.

Secure UNIX socket-based controlling system for high-throughput protein crystallography experiments.
Gaponov Y, Igarashi N, Hiraki M, Sasajima K, Matsugaki N, Suzuki M, Kosuge T, Wakatsuki S.
J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):17-20.

2003

The structure and function of GGAs, the traffic controllers at the TGN sorting crossroads.
Nakayama K, Wakatsuki S.
Cell Struct Funct. 2003 Oct;28(5):431-42. Review.

Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport.
Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K, Wakatsuki S.
Nat Struct Biol. 2003 May;10(5):386-93.

2002

Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain.
Nogi T, Shiba Y, Kawasaki M, Shiba T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Takatsu H, Nakayama K, Wakatsuki S.
Nat Struct Biol. 2002 Jul;9(7):527-31.

Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K, Wakatsuki S.
Nature. 2002 Feb 21;415(6874):937-41.