Beamlines Parameter Files

  1. HKL2000

    To process the diffraction images in your laboratory, please download the file def.site corresponding to the beamline of interest (where you collected the data). It is recommended that you generate a new directory under your $HKLDIR for the beamline, and put in there the file def.site.

    $ cd $HKLDIR
    $ mkdir PF_BL-5
    $ cd PF_BL-5
    $ cp /where/you/downloaded/def.site.bl5 def.site


    def.site.1a BL-1A (λ~1A) 2012.11.8
    def.site.1a_lowE BL-1A (low energy λ=2.7A) 2012.5.22
    def.site.5a BL-5A (Q315r, 2012.10~) 2012.11.8
    def.site.17a BL-17A (Q270, 2012.10~) 2012.11.8
    def.site.nw12a AR-NW12A 2010.10.6
    def.site.ne3a AR-NE3A 2012.11.8

    Important!! We are operating a new detector Pilatus 2M at BL1A.

    Important!! We are operating ADSC Quantum270 at AR-NE3A. For processing the data, please refer to the following page:
    Japanese page / English page

    Important!! HKL2000 obtains the direct beam position from a def.site file, NOT from the image header. Therefore, make sure that your def.site is new and has the correct direct beam position.

  2. Mosflm

    To process your data with Mosflm, you will need to download the appropriate init.mac, and edit the file with your experimental confitions before processing it. You can then run this macro file using the Mosflm command line by typing @init.mac.

    init.mac.5a_bin BL-5A Q315 2x2 binning 2007.6.15
    init.mac.5a_bin BL-5A Q315 no binning 2007.6.15
    init.mac.6a BL-6A Q4R 2007.6.15
    init.mac.17a BL-17A Q270 2007.6.15
    init.mac.nw12_bin NW12A Q210r no binning (default) 2007.6.15
    init.mac.nw12_full NW12A Q210r 2x2 binning 2007.6.15

  3. DPS/Mosflm/SCALA

    Download the appropriate parameter file, and specify it in the main window of the DPS GUI.

    prototype_Q4R.param BL-6A
    prototype_Q210_full.param NW12A no binning (default)
    prototype_Q210_bin.param NW12A 2x2 binning
    prototype_Q270.param BL-17A
    prototype_Q315_full.param BL-5A no binning
    prototype_Q315_bin.param BL-5A 2x2 binning (default)

  4. XDS

    Download and execute a script file generate_XDS.INP, which is originally written by Dr. Kay Diederichs and modified for PF PX beamline's.
    You can see how to use this script in XDS Wiki.
    http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_XDS.INP

[Back] [Home]